Biocomputing & Ubiquitous Networking Laboratory

Information Systems Division
Computing & Communications Center, Kagoshima University
http://biocomputing.cc/


  Our Mission

  • Practical research and development in various fields of biocomputing and ubiquitous networking.  

  Researchers

  • MASUYA Masato, Professor
  • HAYASHIDA Yoshikage, Graduate Student (2017-)
  • NAKASHIMA Akihiro, Graduate Student (2016-)
  • NISHI Teruki, Graduate Student (2016-)
  • HAMAUCHI Manabu, Graduate Student (2017-)
  • MOCHIDA Katsuhiro, Graduate Student (2017-)
  • SONODA Hiroyuki, Graduate Student (2017-)
  • TOKUNAGA Kousuke, Graduate Student (2017-)
  • FUKUDA Shinji, Undergraduate Student (2018-)
  • FUKUSHIMA Seiji, Undergraduate Student (2018-)
  • MIZUCHI Mitsuhiro, Undergraduate Student (2018-)
  • NISHIMURA Isshin, Undergraduate Student (2018-)
  • ONO Manami, Undergraduate Student (2018-)

  Research Collaborators

  • SHIMOZONO Koichi, Associate Professor, Computing & Communications Center
  • AOKI Kenji, Associate Professor, Miyazaki University
  • KUBOTA Shinichiro, Associate Professor, Kumamoto University

  Alumni

  • KOHIRA Takahisa, Undergraduate Student (2017-2018)
  • SAKAKI Shinpei, Undergraduate Student (2017-2018)
  • KANBARA Takashi, Graduate Student (2016-2018)
  • NAKAHARA Yuki, Undergraduate-Graduate Student (2015-2018)
  • DOAN Anh Dung, Undergraduate Student (2016-2017)
  • HORITANI Nobuaki, Undergraduate Student (2016-2017)
  • KAGE Takehiro, Undergraduate-Graduate Student (2014-2017)
  • KAWADA Masato, Undergraduate Student (2015-2016)
  • HIRATA Ikumi, Undergraduate Student (2015-2016)
  • SEGUCHI Masaki, Undergraduate-Graduate Student (2013-2016)
  • MUROYA Takahide, Undergraduate-Graduate Student (2012-2015)
  • IIDA Takumi, Graduate Student (2013-2015)
  • YAMAGUCHI Hiroyuki, Graduate Student (2014-2015)
  • OCHIMIZU Daiki, Undergraduate Student (2014-2015)
  • NAKAMURA Hiromi, Undergraduate Student (2014-2015)
  • YAMAMOTO Ryo, Undergraduate Student (2013-2014)
  • NORIO Takaaki, Undergraduate Student (2013-2014)
  • HIGASHI Kyohei, Undergraduate-Graduate Student (2010-2013)
  • SHIOMORI Hideaki, Undergraduate Student (2012-2013)
  • TANAKA Hiroaki, Undergraduate Student (2012-2013)
  • UEHARA Kou, Graduate Student (2009-2012)
  • HISANO Kouhei, Graduate Student (2009-2012)
  • NAKASHIMA Keita, Undergraduate-Graduate Student (2009-2012)
  • YAMADA Toshiki, Undergraduate-Graduate Student (2009-2012)
  • IKEDA Tomomi, Undergraduate Student (2011-2012)
  • OOMACHI Takuma, Undergraduate Student (2011-2012)
  • YANAI Atsushi, Undergraduate Student (2011-2012)
  • KOIKE Toshikazu, Undergraduate-Graduate Student (2008-2011)
  • SUZUKI Ryosuke, Undergraduate-Graduate Student (2008-2011)
  • NAKANO Ryuichi, Undergraduate-Graduate Student (2008-2011)
  • UEYAMA Syuichi, Undergraduate Student (2010-2011)
  • HARUTA Syozo, Undergraduate Student (2010-2011)
  • ATAKA Tatsushige, Undergraduate Student (2010-2011, Supervised by Assoc. Prof. Mizuno)
  • SHIMOGAWA Yukio, Undergraduate-Graduate Student (2007-2010)
  • KATAHIRA Keiichi, Graduate Student (2008-2010)
  • TOSHIMA Wataru, Graduate Student (2009-2010)
  • NISHIHARA Kae, Undergraduate Student (2009-2010)
  • SAKASEGAWA Naruhito, Graduate Student (2007-2009)
  • SHIMAZU Taiki, Undergraduate-Graduate Student (2006-2009)
  • HOUZAKI Youichiro, Undergraduate-Graduate Student (2006-2009)
  • YAMAGUCHI Kenta, Graduate Student (2007-2009)
  • AIKO Daisuke, Undergraduate Student (2008-2009)
  • MATSUMOTO Masaya, Undergraduate-Graduate Student (2005-2008)
  • MATIDA Kousuke, Undergraduate Student (2006-2008)
  • YOSHINAGA Kouhei, Undergraduate Student (2007-2008)
  • OHYAMA Shoh, Undergraduate-Graduate Student (2004-2007)
  • KAWATA Shozo, Undergraduate-Graduate Student (2004-2007)
  • TAJITSU Koichi, Undergraduate-Graduate Student (2004-2007)
  • SATO Takahiko, Undergraduate Student (2005-2006)
  • WATANABE Satoshi, Undergraduate Student (2005-2006)
  • OISHI Kei, Undergraduate-Graduate Student (2003-2006)
  • SHIRAO Hiroaki, Undergraduate-Graduate Student (2002-2005)
  • KAMIKOKURYO Takashi, Undergraduate-Graduate Student (2001-2004)
  • YAMASHITA Yusuke, Undergraduate-Graduate Student (2001-2004)
  • KIYOMIZU Harumi, Undergraduate Student (2002-2003)
  • SHIMONISHINOSONO Makoto, Undergraduate Student (2000-2001)
  • TAKAOKA Toshiya, Undergraduate Student (2000-2001)
  • SAKAE Yoshitake, Undergraduate-Graduate Student (1998-2001)
  • KAWANAKA Kenji, Undergraduate-Graduate Student (1998-2001)
  • HIRAHARA Takashi, Undergraduate Student (1999-2000)
  • KUROYA Hiroyuki, Graduate Student (1998-2000)
  • NARASAKO Yusuke, Graduate Student (1998-2000)

  Research & Development Projects

  • Broadband Acceleration Project(2013-2015), sponsored by Ministry of Internal Affairs and Communications
    YAMAMOTO Ryo, 2013-2014.
    MUROYA Takahide, 2013-2015.
    YAMAGUCHI Hiroyuki, OCHIMIZU Daiki, KAGE Takehiro, NAKAMURA Hiromi, 2014-2015.
  • Community Broadband Project(2006-2009) , sponsored by Ministry of Internal Affairs and Communications
    OHYAMA Shoh, KAWATA Shozo, TAJITSU Koichi, 2006-2007.
    MATSUMOTO Masaya, MATIDA Kousuke, 2006-2008.
    YOSHINAGA Kouhei, 2007-2008.
    SHIMAZU Taiki, HOUZAKI Youichiro, 2006-2009.
    SAKASEGAWA Naruhiro, YAMAGUCHI Kenta, SIMOGAWA Yukio, 2007-2009.
    KATAHIRA Keiichi, AIKO Daisuke, KOIKE Toshikazu, SUZUKI Ryosuke, NAKANO Ryuichi, 2008-2009.
  • SCOPE-WINDS(2009-2010) , sponsored by Ministry of Internal Affairs and Communications
    UEHARA Kou, 2009-2010.
  • NSOL , partially sponsored by Ministry of Education, Culture, Sports, Science and Technology
    (Numerical calculation program of molecular surface area, volume, and SOLvation energy)
    • Generalized Spiral Set, by NAKASHIMA Keita, 2010.
    • Polygon Method, by KATAHIRA Keiichi, 2010.
    • Slice Method, by SAKASEGAWA Naruhito, 2009.
  • Web Applications
    • Molecular Visualization by TAJITSU Koichi, 2005.
    • Dihedral Angle Plot by OHYAMA Shoh, 2005.
    • FASTA XML Web Service by KAMIKOKURYO Takashi, 2004.
    • FASTA Homology Search by KIYOMIZU Harumi, 2003.
    • Molecular Visualization by SHIRAO Hiroaki, 2003.
    • Molecular Surface Area & Volume Calculation by KAMIKOKURYO Takashi, 2002.
  • HDTV Streaming
    • HDV Streaming using VLC by MATSUMOTO Masaya, 2006.
  • PCEC (Parallel Computing Environment on the Classroom)
    • PCEC ver.1.0 using MPICH2 on Windows XP　by TAJITSU Koichi and SATO Takahiko, 2006.
  • Internet Telescope by WATANABE Satoshi, 2006.

  Essential Links

  Selected Molecular Viewers

RasMol is very popular, but image quality of RasMol and its derivative (Protein Explorer) are low.

 * .cc is the country code TLD for Cocos (Keeling) Islands, a territory of Australia, but is now being marketed globally as a generic domain name.

Last Update: 2018/4/10